3,500+ Patients Helped

Root-Cause Autoimmune Care

Not just a prescription to manage symptoms.

Living with an autoimmune condition? Indigo Health Clinic identifies the upstream drivers behind immune dysfunction — so your body can start working with you again.
"After years of being told my labs were "normal" and my symptoms were stress, Indigo finally found what was actually wrong. I have my life back."
- Sarah M.

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Understanding Autoimmune Disease

Autoimmune disease doesn't develop overnight — and it rarely has a single cause.
In autoimmune conditions, the immune system attacks the body's own tissues — and we're here to find out why.
Common autoimmune symptoms include:
Persistent fatigue
Joint pain
Stiffness
Swelling
Brain fog
Cognitive difficulties
Skin rashes, hives, or unexplained flares
Thyroid dysfunction 
Unexplained weight changes
Muscle pain
Digestive issues
Food sensitivities
Anxiety or depression
Frequent infections

Our Approach to Autoimmune Disease

We don't suppress the immune system and call it care — we investigate why it went off course.

We evaluate:

  • Immune system dysregulation and inflammatory markers
  • Gut health and intestinal permeability (leaky gut)
  • Hormonal imbalances (including thyroid and adrenal function)
  • Environmental triggers: mold, heavy metals, and toxins
  • Chronic and latent infections that may provoke immune flares
  • Nutrient deficiencies that impair immune regulation
  • Stress response and nervous system dysregulation
How It Works

Get Started on Your Personalized Autoimmune Care Plan

01

Deep-Dive Intake & History Review

Understanding the full timeline of your health is where root-cause care begins:

  • Comprehensive review of your symptom history, prior diagnoses, and treatments
  • Assessment of diet, lifestyle, stress, sleep, and environmental exposures
  • Evaluation of prior labs and imaging — with fresh, functional eyes
  • Identification of key patterns and potential upstream triggers

We connect the dots your previous providers may have missed.

02

Advanced Functional Testing

What's actually driving your immune dysfunction:

  • Comprehensive immune and inflammatory markers
  • Intestinal permeability and gut microbiome analysis
  • Thyroid panel beyond standard TSH
  • Adrenal and cortisol rhythm evaluation
  • Environmental toxin, heavy metal, and mold exposure testing
  • Nutritional deficiency assessment
  • Chronic infection and latent pathogen screening

Data — not guesswork — drives every protocol we build.

03

Personalized Immune-Modulating Protocol

Your care plan is built around your biology:

  • Anti-inflammatory guidance
  • Gut healing strategies
  • Targeted supplementation
  • Hormone balancing
  • Detoxification support
  • Stress regulation and nervous system support
  • Medical-grade supplementation

Every recommendation is evidence-informed and specific to what your labs reveal.

04

Ongoing Monitoring & Protocol Refinement

Autoimmune healing is not linear — and your care shouldn't be static.

  • Regular follow-up visits to reassess symptoms and retesting as needed
  • Protocol adjustments based on your body’s response
  • Identification of flare triggers and prevention strategies
  • Long-term immune resilience building

Our goal is remission support and lasting immune stability — not symptom management indefinitely.

About our clinic

Indigo Health Clinic was founded with one purpose: to give patients the kind of care we wish we had when we were searching for answers.

Our practice is built on compassion, curiosity, and the belief that healing happens when you’re truly seen, heard, and supported. Our integrative team looks beyond symptoms to understand the full picture — your history, lifestyle, environment, labs, and unique physiology.

At Indigo, you’ll find:

  • A multidisciplinary care team trained in integrative, functional, and conventional medicine.
  • Advanced diagnostics and specialty testing to locate root causes often missed by standard care.
  • Medical-grade IV therapy & targeted protocols tailored to your needs (immune support, detox, nutrient restoration, energy, gut health, etc.).
  • Long-term, relationship-based care - we don’t just prescribe; we guide, monitor, and adjust as your healing unfolds.

The Indigo Promise

Why Choose Indigo Health Clinic

Traditional Care

  • Symptom suppression with Immunosuppressants
  • One-size-fits-all treatment
  • Narrow, standard bloodwork
  • Siloed care
  • No investigation of root causes
  • Minimal lifestyle or nutrition guidance

Indigo Approach

  • Full-body, whole-system approach
  • Root-cause investigation
  • Personalized, data-informed protocols
  • Advanced functional testing
  • Gut, immune, hormone, and toxin evaluation
  • Ongoing monitoring and protocol refinement
  • Nutrition, lifestyle, and environment addressed
Become A Patient
3,500+ Patients Helped

Real People. Real Healing

Marta S.
"Indigo didn’t just treat my Lyme. They helped me rebuild from the inside out. My body is now stronger and more grounded than ever before. Yes, it’s an investment. But it was the only path to root-level healing. It was scary to move away from conventional medicine, but this approach—holistic, evidence-informed, human—was what I needed to truly heal. I’m now able to live my life to the fullest."
Stephanie H.
"No doctor that I've been to with any of my symptoms, even talked about Lyme.. Dr. Sharkar understood it inside and out and answered every question I had—about long-term outcomes, healing timelines, and everything in between. I feel like I have my life back!"
Jenna E.
"I just want to send my heartfelt gratitude to you all at indigo. The change I’m seeing in myself in more than one way just makes me so thankful. I’ve looked for this change in so many doctors' offices over the years and never found a place who could give me what I needed."

Is Indigo Right for You?

If you’ve been searching for real answers and a treatment approach that finally makes sense, you’re in the right place.

You may be a strong candidate for care at Indigo if you:

  •  Have received an autoimmune diagnosis but feel like the root cause was never fully explored.
  • Are experiencing persistent symptoms despite medication or conventional treatment.
  • Have been told your labs are normal but know something is wrong.
  • Want to understand why your immune system is misfiring — not just suppress it,
  • Are ready to address nutrition, lifestyle, gut health, and environmental factors alongside clinical care.
  • Are seeking a personalized, data-informed plan built around your biology.

We work with patients who are newly diagnosed and those who have been managing autoimmune conditions for years. Wherever you are in your journey, we meet you there.

Autoimmune disease is the immune system asking a question — loudly. Our job is not to silence the alarm. It's to find what set it off. In my years of clinical practice, I have seen patients reverse antibody levels, reduce flares, and reclaim their lives when we address what's actually driving immune dysfunction. That's the medicine I believe in, and it's what we practice every day at Indigo.

Commonly Asked Questions

Your Questions Answered

If you're living with an autoimmune condition, you probably have questions about what's actually driving it — and whether a different approach is possible. We've answered the most common ones here.

  • What is a functional medicine approach to autoimmune disease?

    Functional medicine investigates the root causes of immune dysregulation — including gut health, hormonal imbalances, environmental exposures, chronic infections, and nutrient deficiencies — rather than focusing solely on suppressing immune activity. The goal is to identify and address the upstream drivers that are sustaining the autoimmune process.

  • Can autoimmune disease actually be reversed?

    Autoimmune conditions exist on a spectrum, and many patients experience significant reduction in symptoms, antibody levels, and flare frequency when upstream triggers are addressed. While outcomes vary by individual and condition, remission support and measurable improvement are realistic goals — not just symptom suppression. We do not make cure claims; we focus on restoring balance and resilience.

  • Do you treat Hashimoto's thyroiditis specifically?

    Yes — Hashimoto's is one of the most common conditions we address at Indigo. We assess beyond standard thyroid labs to evaluate antibody levels, gut permeability, food sensitivities, and nutrient co-factors involved in immune-thyroid regulation. Our approach aims to reduce the autoimmune attack on thyroid tissue alongside optimizing hormone levels.

  • Do you treat rheumatoid arthritis (RA)?

    We address RA through a root-cause lens — assessing gut microbiome disruption, chronic infections, inflammatory burden, and nutrient status. Our care is focused on the biological environment that drives RA activity, and may be supportive alongside medications you are currently taking.

  • Is fibromyalgia considered an autoimmune condition?

    Fibromyalgia is classified as a central sensitization syndrome rather than a classic autoimmune disease, but there is significant overlap in immune dysregulation, inflammation, and gut involvement. At Indigo, we take a comprehensive approach that addresses nervous system sensitization, mitochondrial function, gut health, and immune-inflammatory drivers.

  • What kind of testing does Indigo use for autoimmune conditions?

    We use advanced conventional and functional testing that goes well beyond standard bloodwork — including comprehensive thyroid panels with antibodies, intestinal permeability markers, gut microbiome analysis, inflammatory cytokines, adrenal function, environmental toxin panels, and nutritional deficiency assessment. Testing is always chosen based on your clinical picture.

  • Can I come to Indigo if I'm already taking immunosuppressant medications?

    Yes. Many of our patients are already on conventional medications when they come to us. Our functional approach is complementary and focused on the root-cause terrain — we are not here to replace your current care, but to address what may not be fully covered by medication alone. We always review your full history and current medications during intake.

  • How long does it take to see improvement?

    Timelines vary depending on the condition, how long it has been active, and how many upstream drivers are involved. Some patients notice meaningful improvements within 8–12 weeks; deeper systemic changes may take 6 months or longer. We monitor progress regularly and adjust protocols based on your response.

  • Does Indigo accept insurance for autoimmune care?

    Indigo is an out-of-network, self-pay practice and does not bill insurance. We do not provide insurance billing, codes, or documentation for services other than office visits, physical exams and our lab draws. Third-party labs, IV therapies, medications, and other treatments are self-pay, and receipts are provided for your records.

  • What makes Indigo different from a rheumatologist or endocrinologist?

    Specialist care is valuable — and we do not replace it. Where Indigo differs is in our root-cause investigative approach: we look at the whole biological system, including gut health, environmental exposures, nutritional status, and lifestyle factors that specialists may not have time to fully evaluate. We provide an integrative layer of care that addresses what's upstream from the diagnosis.

  • Do you see patients who have never received a formal autoimmune diagnosis?

    Yes. Many patients come to us with a constellation of symptoms that suggest immune dysregulation — fatigue, joint pain, brain fog, thyroid issues, skin flares — but no clear diagnosis yet. We can help identify whether an autoimmune process may be involved and build a care plan based on your clinical data.

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  • 30+ Years Expertise
  • 4.8/5 Rating
  • Certified Health Specialist

DISCLAIMER
The information on this page is intended for educational purposes only and does not constitute medical advice, diagnosis, or treatment. Indigo Integrative Health Clinic provides personalized, data-informed care; individual results vary based on health history, condition severity, and personal factors. Functional medicine services are intended to complement — not replace — care from your primary healthcare provider or specialist. Please consult a qualified healthcare provider before making changes to your health protocol.